As an avid Stargate SG-1 fan and an atheist, there's a couple little fun cross sections. In a recent episode, Line In The Sand, had perhaps the weirdest combination of Sci-fi and Religious Pluralism. Tomin the faith-head quasi-husband to Vala, is moving up in the ranks of the Ori fleet. The Ori are ascended evil aliens which seek to take over the galaxy by gathering worshipers on the promise of an afterlife etc. However, while reading the Book of Origin, they took a lot of care to have the Prior (religious empowered guy) misinterpret the book.
That's right, the sacred book of evil ascended aliens with wishes to take over the universe (who actually exist (in the Stargate universe)) and to do evil... it simply *MUST* have been misinterpreted.